Prim-SNPing | Tool name | Prim-SNPing |
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| URL | http://bio.kuas.edu.tw/prim-snping. |
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| Important features | Designs primers for SNP genotyping, mutagenic study etc. |
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| Citations | Chang HW, Chuang LY, Cheng YH, Hung YC, Wen CH, Gu DL, Yang CH. Prim-SNPing: a
primer designer for cost-effective SNP genotyping. Biotechniques. 2009
May;46(6):421-31. PubMed PMID: 19480636. |
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| Year of publication | 2009 |
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| Rank by usage frequency | 100 |
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| Comments | Features are written as claimed by the author. Not validated completely. |
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| Function | Mutational analysis, SNP primers, General PCR |
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| Category | Online, Free |
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| Features | 1) Designs normal PCR primer.
2) Designs primer pairs with RFLP restriction enzyme inside the PCR product for target SNP genotyping.
3) CTPP PD function is available to perform SNP genotyping without the requirement for restriction enzyme. The principle of PCR-CTPP was described in "Nobuyuki Hamajima. PCR-CTPP: a newA0genotyping technique in the era of genetic epidemiology. Exp Rev Mol Diagn, 1:119-123, 2001".
Note: almost all routine features are present, results can be emailed or can be availed online or both. |
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